C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098036 Cln3-003 ENSMUSG00000030720 10090 - 7:126572086-126583190 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000098036
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000098036 8.927±0.93 5.623±1.10 2.693±1.79 9.791±0.00 7.981±1.85 2.342±0.90 8.220±1.60 3.630±1.59 2.459±0.34 10.601±2.82 32.639±6.56 2.939±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TS CIL_0005TS_0002 CGP 7:126571207-126589112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000046 IMP autophagic vacuole fusion
GO:0001508 IMP action potential
GO:0005515 IPI protein binding
GO:0005764 IDA lysosome
GO:0005765 IEA lysosomal membrane
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005776 IDA autophagic vacuole
GO:0006520 IMP cellular amino acid metabolic process
GO:0006865 IMP amino acid transport
GO:0007034 IBA vacuolar transport
GO:0007040 IMP lysosome organization
GO:0007042 IBA lysosomal lumen acidification
GO:0008306 IMP associative learning
GO:0010468 ISO regulation of gene expression
GO:0015809 IBA arginine transport
GO:0016236 IMP macroautophagy
GO:0016242 IMP negative regulation of macroautophagy
GO:0016485 IMP protein processing
GO:0031301 IBA integral component of organelle membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035235 IMP ionotropic glutamate receptor signaling pathway
GO:0042133 IMP neurotransmitter metabolic process
GO:0043086 IMP negative regulation of catalytic activity
GO:0043524 IDA negative regulation of neuron apoptotic process
GO:0045861 IMP negative regulation of proteolysis
GO:0048306 IPI calcium-dependent protein binding
GO:0050885 IMP neuromuscular process controlling balance
GO:0051480 IDA cytosolic calcium ion homeostasis
GO:0061024 IMP membrane organization

Homologs

No Homologs available.

Loading