C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA B020018G12 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000104983 B020018G12Rik-001 ENSMUSG00000078184 10090 - 1:175977777-175979114 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000104983
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000104983 0.033±0.01 0.032±0.03 0.025±0.01 0.020±0.00 0.042±0.03 0.059±0.04 0.091±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006417 IEA regulation of translation
GO:0008380 IEA RNA splicing
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369307 RBM8A-002 protein_coding Homo_sapiens 0 701
ENST00000484825 RBM8A-004 retained_intron Homo_sapiens 0 198
ENST00000498565 C14orf39-002 nonsense_mediated_decay Homo_sapiens 1e-28 130
ENST00000498663 RBM8A-003 retained_intron Homo_sapiens 0 202
ENST00000555532 RBM8B-001 processed_pseudogene Homo_sapiens 0 627
ENST00000583313 RBM8A-001 protein_coding Homo_sapiens 0 713

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