C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: embryonic ectoderm development
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107234 Eed-001 ENSMUSG00000030619 10090 - 7:89954656-89980983 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107234
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107234 4.037±1.14 5.315±3.60 11.085±0.98 8.570±2.84 5.879±1.56 6.735±2.24 3.869±0.31 4.942±0.98 10.365±7.21 4.511±0.72 4.499±0.50 7.386±4.26 15.400±4.48 8.375±1.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073O CIL_00073O_0002 CGP 7:89917529-89980983

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001739 IDA sex chromatin
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006349 IMP regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016571 IMP histone methylation
GO:0035098 IDA ESC/E(Z) complex
GO:0042054 IEA histone methyltransferase activity
GO:0042802 IEA identical protein binding
GO:0045120 IDA pronucleus
GO:0061087 IMP positive regulation of histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263360 EED-001 protein_coding Homo_sapiens 0 2634
ENST00000327320 EED-003 protein_coding Homo_sapiens 0 1877
ENST00000351625 EED-014 protein_coding Homo_sapiens 0 1354
ENST00000420490 RP11-51C14.1-001 processed_pseudogene Homo_sapiens 0 713
ENST00000512025 RP11-791G16.5-001 processed_pseudogene Homo_sapiens 0 351
ENST00000524673 EED-008 retained_intron Homo_sapiens 0 580
ENST00000525244 EED-004 retained_intron Homo_sapiens 0 1543
ENST00000527888 EED-009 protein_coding Homo_sapiens 0 830
ENST00000528180 EED-002 protein_coding Homo_sapiens 0 1437
ENST00000528250 EED-011 retained_intron Homo_sapiens 0 564
ENST00000533228 EED-010 retained_intron Homo_sapiens 0 455
ENST00000534564 EED-007 retained_intron Homo_sapiens 0 955
ENST00000534595 EED-006 protein_coding Homo_sapiens 0 392

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