C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 5'-nucleotidase, cytosolic IIIB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107397 Nt5c3b-001 ENSMUSG00000017176 10090 - 11:100429359-100440928 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000107397
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000107397 4.667±0.00 0.495±0.00 2.723±0.60 34.099±3.30 12.669±1.12 10.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003K6 CIL_0003K6_0003 CGP 11:100408456-100424824
CIL_0007BM CIL_0007BM_0002 CGP 11:100415697-100441808
CIL_00050F CIL_00050F_0002 CGP 11:100422321-100457022

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000287 IEA magnesium ion binding
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0008253 IEA 5'-nucleotidase activity
GO:0009117 IEA nucleotide metabolic process
GO:0016311 IEA dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393910 NT5C3B-015 retained_intron Homo_sapiens 0 448
ENST00000415460 NT5C3B-009 protein_coding Homo_sapiens 0 455
ENST00000435506 NT5C3B-008 protein_coding Homo_sapiens 0 1018
ENST00000445655 NT5C3B-011 nonsense_mediated_decay Homo_sapiens 0 889
ENST00000460893 NT5C3B-006 retained_intron Homo_sapiens 0 409
ENST00000469698 NT5C3B-004 retained_intron Homo_sapiens 0 909
ENST00000470690 NT5C3B-005 retained_intron Homo_sapiens 0 909
ENST00000475053 NT5C3B-003 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000476921 NT5C3B-014 retained_intron Homo_sapiens 0 771
ENST00000481693 NT5C3B-012 retained_intron Homo_sapiens 0 403
ENST00000486304 NT5C3B-013 protein_coding Homo_sapiens 0 296
ENST00000495317 NT5C3B-010 retained_intron Homo_sapiens 4e-26 122
ENST00000517701 NT5C3B-016 retained_intron Homo_sapiens 0 769
ENST00000521789 NT5C3B-017 protein_coding Homo_sapiens 0 555
ENST00000523903 NT5C3B-001 retained_intron Homo_sapiens 0 1027

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