C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fer-1-like 4 (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109611 Fer1l4-008 ENSMUSG00000013338 10090 - 2:156019139-156052947 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000109611
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000109611 0.143±0.00 18.583±0.00 0.009±0.01 0.631±0.31 0.429±0.19 0.007±0.00 0.060±0.04 0.008±0.00 0.091±0.00 0.170±0.13 0.007±0.00 0.276±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000056105 FER1L6-201 protein_coding Danio_rerio 2e-26 126
ENSDART00000146675 FER1L6-001 protein_coding Danio_rerio 2e-26 126
ENSDART00000041685 OTOF (1 of 2)-201 protein_coding Danio_rerio 0.00000000002 77
ENSDART00000149773 OTOF (1 of 2)-002 protein_coding Danio_rerio 0.00000000002 77
ENSDART00000149294 OTOF (1 of 2)-001 protein_coding Danio_rerio 0.00000000002 77
ENST00000430275 FER1L4-016 processed_transcript Homo_sapiens 0 2438
ENST00000440443 FER1L4-003 processed_transcript Homo_sapiens 0 313
ENST00000452272 FER1L4-011 retained_intron Homo_sapiens 0 195
ENST00000611673 FER1L4-002 retained_intron Homo_sapiens 0 573
ENST00000613061 FER1L4-008 retained_intron Homo_sapiens 0 889
ENST00000615531 FER1L4-010 unitary_pseudogene Homo_sapiens 0 5541
ENST00000616283 FER1L4-006 retained_intron Homo_sapiens 0 1133
ENST00000616711 FER1L4-009 retained_intron Homo_sapiens 0 2804
ENST00000621044 FER1L4-001 retained_intron Homo_sapiens 0 817

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