C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 184a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110832 Tmem184a-001 ENSMUSG00000036687 10090 - 5:139802485-139813243 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonKidneyLiverLungOvaryTestisENSMUST00000110832
Transcript ID Adipose Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000110832 1.139±0.00 2.657±0.32 8.832±0.94 5.868±0.78 3.791±0.65 5.721±0.47 9.024±2.51 9.232±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_0002H7 CIL_0002H7_0003 CGP 5:139751282-139802653
CIL_0002H8 CIL_0002H8_0003 CGP 5:139791513-139819917

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IDA endosome
GO:0016021 IEA integral component of membrane
GO:0018992 IMP germ-line sex determination
GO:0031901 IDA early endosome membrane
GO:0032880 IMP regulation of protein localization
GO:0051046 IMP regulation of secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297477 TMEM184A-001 protein_coding Homo_sapiens 0 990
ENST00000319010 TMEM184A-009 protein_coding Homo_sapiens 0 553
ENST00000319018 TMEM184A-002 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000414730 TMEM184A-005 protein_coding Homo_sapiens 0 451
ENST00000421923 TMEM184A-006 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000431208 TMEM184A-008 protein_coding Homo_sapiens 0 331
ENST00000441933 TMEM184A-004 protein_coding Homo_sapiens 0 387
ENST00000468535 TMEM184A-003 retained_intron Homo_sapiens 0 326
ENST00000474813 TMEM184A-007 retained_intron Homo_sapiens 0 544

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