C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: shisa family member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112059 Shisa5-002 ENSMUSG00000025647 10090 + 9:109038565-109057719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112059
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112059 27.193±2.07 19.951±0.68 2.510±0.22 67.589±0.00 30.993±3.10 9.080±2.32 24.862±5.32 2.358±0.60 40.851±10.95 1.878±0.35 29.017±11.70 16.939±8.27 1.090±0.24

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005635 IDA nuclear envelope
GO:0005783 IDA endoplasmic reticulum
GO:0016021 IEA integral component of membrane
GO:0042771 IDA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0072332 IMP intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296444 SHISA5-001 protein_coding Homo_sapiens 0 387
ENST00000417841 SHISA5-017 protein_coding Homo_sapiens 9.80909e-45 183
ENST00000417962 SHISA5-006 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000424965 SHISA5-016 nonsense_mediated_decay Homo_sapiens 0 195
ENST00000426002 SHISA5-002 protein_coding Homo_sapiens 0 302
ENST00000442747 SHISA5-007 protein_coding Homo_sapiens 0 361
ENST00000443308 SHISA5-009 protein_coding Homo_sapiens 0 327
ENST00000444115 SHISA5-012 protein_coding Homo_sapiens 0 361
ENST00000455783 TMEM229A-001 protein_coding Homo_sapiens 0.000009 57
ENST00000460758 SHISA5-011 retained_intron Homo_sapiens 2e-26 124
ENST00000465449 SHISA5-004 processed_transcript Homo_sapiens 0 300
ENST00000466424 SHISA5-013 processed_transcript Homo_sapiens 0 294
ENST00000486344 SHISA5-015 processed_transcript Homo_sapiens 0 315
ENST00000494854 SHISA5-003 retained_intron Homo_sapiens 0 298
ENST00000497863 SHISA5-014 retained_intron Homo_sapiens 1e-26 124
ENST00000612611 SHISA5-201 protein_coding Homo_sapiens 0 302
ENST00000619810 SHISA5-202 protein_coding Homo_sapiens 0 361

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