C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 4 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112359 Hps4-003 ENSMUSG00000042328 10090 + 5:112343083-112378414 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112359
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112359 1.978±0.73 2.719±0.65 2.416±0.23 4.697±1.71 1.341±0.15 2.010±0.00 0.970±0.42 2.073±0.14 1.199±0.33 1.757±0.31 0.705±0.16 2.628±0.69 1.849±0.93 10.505±0.92

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005764 ISS lysosome
GO:0006605 ISS protein targeting
GO:0006996 IMP organelle organization
GO:0007040 ISS lysosome organization
GO:0007596 IMP blood coagulation
GO:0016020 ISS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0030318 IMP melanocyte differentiation
GO:0031085 IEA BLOC-3 complex
GO:0042470 ISS melanosome
GO:0042803 ISS protein homodimerization activity
GO:0042827 IEA platelet dense granule
GO:0046983 ISS protein dimerization activity
GO:0050821 ISS protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336873 HPS4-006 protein_coding Homo_sapiens 0 496
ENST00000398145 HPS4-005 protein_coding Homo_sapiens 0 496
ENST00000402105 HPS4-008 protein_coding Homo_sapiens 0 457
ENST00000422379 HPS4-022 protein_coding Homo_sapiens 0 453
ENST00000429411 HPS4-010 nonsense_mediated_decay Homo_sapiens 2e-35 156
ENST00000439453 HPS4-002 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000459918 HPS4-017 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000464362 HPS4-011 nonsense_mediated_decay Homo_sapiens 2e-35 156
ENST00000466781 HPS4-004 retained_intron Homo_sapiens 0 446
ENST00000485842 HPS4-016 retained_intron Homo_sapiens 0 270
ENST00000496385 HPS4-003 retained_intron Homo_sapiens 0 414

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