C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi autoantigen, golgin subfamily a, 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113377 Golga2-001 ENSMUSG00000002546 10090 + 2:32288253-32307921 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000113377
Transcript ID Bladder Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000113377 8.069±1.84 16.627±1.89 4.687±0.10 7.572±1.77 6.991±1.27 7.877±2.98 6.925±2.06 15.723±3.87 18.211±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0002 VISTA 2:31827730-32428586

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005794 IDA Golgi apparatus
GO:0005801 IDA cis-Golgi network
GO:0016020 IEA membrane
GO:0050772 IMP positive regulation of axonogenesis
GO:0051645 IMP Golgi localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128274 golga2-201 protein_coding Danio_rerio 0 193
ENSDART00000092087 golga2-001 protein_coding Danio_rerio 0 193
ENST00000290438 GOLGA6A-001 protein_coding Homo_sapiens 4e-36 158
ENST00000300576 GOLGA6C-001 protein_coding Homo_sapiens 2e-32 145
ENST00000314246 GOLGA8DP-002 processed_transcript Homo_sapiens 6e-29 134
ENST00000327271 GOLGA8R-001 protein_coding Homo_sapiens 0.000000000007 77
ENST00000341390 GOLGA8DP-001 transcribed_unprocessed_pseudogene Homo_sapiens 5e-29 134
ENST00000382949 GOLGA8G-004 retained_intron Homo_sapiens 1e-28 134
ENST00000421285 GOLGA6B-001 protein_coding Homo_sapiens 6e-38 163
ENST00000421699 GOLGA2-004 protein_coding Homo_sapiens 0 1906
ENST00000434739 GOLGA6D-001 protein_coding Homo_sapiens 2e-32 145
ENST00000446144 GOLGA8CP-001 unprocessed_pseudogene Homo_sapiens 6e-27 128
ENST00000448387 GOLGA8N-201 protein_coding Homo_sapiens 0.00000000002 77
ENST00000450617 GOLGA2-006 protein_coding Homo_sapiens 0 706
ENST00000509311 GOLGA8O-001 protein_coding Homo_sapiens 0.000000000008 77
ENST00000512626 GOLGA8K-001 protein_coding Homo_sapiens 0.000000000000003 88
ENST00000512938 GOLGA2P1-001 processed_pseudogene Homo_sapiens 0 191
ENST00000524859 GOLGA8G-002 retained_intron Homo_sapiens 1e-28 134
ENST00000525590 GOLGA8G-001 protein_coding Homo_sapiens 5e-29 134
ENST00000526619 GOLGA8F-201 protein_coding Homo_sapiens 1e-28 134
ENST00000532622 GOLGA8F-001 protein_coding Homo_sapiens 5e-29 134
ENST00000562306 RP11-299H22.3-005 transcribed_unprocessed_pseudogene Homo_sapiens 4.2039e-45 187
ENST00000562627 GOLGA8G-005 retained_intron Homo_sapiens 1e-28 134
ENST00000562783 GOLGA8Q-001 protein_coding Homo_sapiens 0.000000000007 77
ENST00000563027 GOLGA8M-001 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000566740 GOLGA8H-001 protein_coding Homo_sapiens 0.0000000000002 82
ENST00000567927 GOLGA8J-001 protein_coding Homo_sapiens 0.000000000007 77
ENST00000569052 GOLGA8T-001 protein_coding Homo_sapiens 0.000000000000003 88
ENST00000569308 GOLGA8G-006 retained_intron Homo_sapiens 8e-29 134
ENST00000569659 GOLGA8N-001 protein_coding Homo_sapiens 0.000000000007 77
ENST00000596977 GOLGA2P9-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 294
ENST00000609374 GOLGA2-014 protein_coding Homo_sapiens 0 1866
ENST00000610329 GOLGA2-201 protein_coding Homo_sapiens 0 597
ENST00000611635 GOLGA8I-002 transcribed_unprocessed_pseudogene Homo_sapiens 0.000000000000004 88
ENST00000611771 GOLGA8J-201 protein_coding Homo_sapiens 0.00000000002 77
ENST00000611957 GOLGA2-202 protein_coding Homo_sapiens 0 1906
ENST00000612633 GOLGA8M-201 protein_coding Homo_sapiens 0.0000000000004 82
ENST00000612805 AC116165.4-201 protein_coding Homo_sapiens 1e-28 134
ENST00000612831 GOLGA8F-203 protein_coding Homo_sapiens 1e-28 134
ENST00000613600 AC116165.5-201 protein_coding Homo_sapiens 1e-28 134
ENST00000613977 GOLGA8F-002 processed_transcript Homo_sapiens 1e-28 134
ENST00000614276 GOLGA8G-002 retained_intron Homo_sapiens 1e-28 134
ENST00000615260 AC243655.1-201 protein_coding Homo_sapiens 0.000000001 71
ENST00000615448 GOLGA8F-001 protein_coding Homo_sapiens 5e-29 134
ENST00000617165 AC243660.2-201 protein_coding Homo_sapiens 1e-28 134
ENST00000618143 AC136687.2-201 protein_coding Homo_sapiens 6e-27 128
ENST00000618219 GOLGA6D-201 protein_coding Homo_sapiens 2e-34 152
ENST00000618263 GOLGA8F-202 protein_coding Homo_sapiens 1e-28 134
ENST00000618768 GOLGA8G-004 retained_intron Homo_sapiens 8e-29 134
ENST00000619115 GOLGA8G-001 protein_coding Homo_sapiens 4e-29 134
ENST00000620011 GOLGA8EP-002 processed_transcript Homo_sapiens 1e-28 134
ENST00000620624 GOLGA8G-003 retained_intron Homo_sapiens 1e-28 134

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