C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glyoxylate reductase 1 homolog (Arabidopsis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115844 Glyr1-202 ENSMUSG00000022536 10090 - 16:5013906-5049910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115844
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115844 11.284±6.55 28.735±6.17 20.907±0.14 22.443±7.77 15.189±5.67 13.623±6.64 5.589±2.16 24.298±6.38 17.345±5.32 17.487±9.34 7.751±0.79 19.009±7.83 25.646±4.77 10.612±3.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001G7 CIL_0001G7_0002 CGP 16:5008730-5049910
CIL_00004T CIL_00004T_0002 CGP 16:5013906-5086285

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004616 IEA phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006098 IEA pentose-phosphate shunt
GO:0035064 IEA methylated histone binding
GO:0051287 IEA NAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000055238 glyr1-201 protein_coding Danio_rerio 0 484
ENSDART00000055239 glyr1-001 protein_coding Danio_rerio 0 473
ENST00000296027 CXCL5-001 protein_coding Homo_sapiens 0 390
ENST00000321919 GLYR1-001 protein_coding Homo_sapiens 0 2599
ENST00000429893 RP5-1041C10.3-001 processed_pseudogene Homo_sapiens 0 1762
ENST00000436648 GLYR1-002 protein_coding Homo_sapiens 0 1707
ENST00000586095 GLYR1-013 retained_intron Homo_sapiens 2e-39 165
ENST00000586901 GLYR1-010 processed_transcript Homo_sapiens 0 712
ENST00000587297 GLYR1-009 protein_coding Homo_sapiens 0 756
ENST00000587875 GLYR1-011 retained_intron Homo_sapiens 0 470
ENST00000587936 GLYR1-006 nonsense_mediated_decay Homo_sapiens 0 424
ENST00000588297 GLYR1-004 protein_coding Homo_sapiens 0 477
ENST00000588732 GLYR1-003 nonsense_mediated_decay Homo_sapiens 0 2272
ENST00000589389 GLYR1-005 protein_coding Homo_sapiens 0 1447
ENST00000591451 GLYR1-007 protein_coding Homo_sapiens 0 2398
ENST00000591846 GLYR1-008 retained_intron Homo_sapiens 5e-37 158
ENST00000592120 UBN1-003 protein_coding Homo_sapiens 3e-36 158

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