C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast cancer metastasis-suppressor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116567 Brms1-201 ENSMUSG00000080268 10090 + 19:5041404-5049917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116567 13.620±1.31 16.213±5.65 12.429±0.43 16.500±3.15 15.907±6.26 25.738±2.40 5.779±2.27 16.828±1.70 13.211±4.80 17.004±1.71 6.253±1.45 18.826±6.29 33.277±15.51 120.428±38.58

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0009987 IDA cellular process
GO:0032088 ISS negative regulation of NF-kappaB transcription factor activity
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0090312 ISS positive regulation of protein deacetylation
GO:2000210 ISS positive regulation of anoikis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359957 BRMS1-001 protein_coding Homo_sapiens 0 979
ENST00000425825 BRMS1-002 protein_coding Homo_sapiens 0 953
ENST00000524699 BRMS1-008 protein_coding Homo_sapiens 0 750
ENST00000525127 BRMS1-010 retained_intron Homo_sapiens 0 588
ENST00000527375 BRMS1-007 nonsense_mediated_decay Homo_sapiens 0 859
ENST00000530238 BRMS1-003 retained_intron Homo_sapiens 0 905
ENST00000530756 BRMS1-005 protein_coding Homo_sapiens 0 924
ENST00000534617 BRMS1-009 retained_intron Homo_sapiens 0 470

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