C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxia telangiectasia mutated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118282 Atm-001 ENSMUSG00000034218 10090 - 9:53439149-53536740 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000118282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000118282 2.177±0.00 0.281±0.12 0.351±0.00 0.646±0.00 0.935±0.44 0.767±0.36 0.416±0.00 0.346±0.08 0.319±0.22 0.580±0.38 0.870±0.37 0.568±0.14 0.793±0.11

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000077 IMP DNA damage checkpoint
GO:0000723 IEA telomere maintenance
GO:0000781 IEA chromosome, telomeric region
GO:0001666 IEA response to hypoxia
GO:0001756 IGI somitogenesis
GO:0002331 IMP pre-B cell allelic exclusion
GO:0003677 IEA DNA binding
GO:0004672 IDA protein kinase activity
GO:0004674 ISS protein serine/threonine kinase activity
GO:0004677 IEA DNA-dependent protein kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005819 IDA spindle
GO:0006281 IMP DNA repair
GO:0006468 IDA protein phosphorylation
GO:0006915 IEA apoptotic process
GO:0006974 TAS cellular response to DNA damage stimulus
GO:0006975 IEA DNA damage induced protein phosphorylation
GO:0007050 IEA cell cycle arrest
GO:0007094 ISS mitotic spindle assembly checkpoint
GO:0007292 IMP female gamete generation
GO:0007420 IGI brain development
GO:0007507 IGI heart development
GO:0008630 IMP intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010212 ISS response to ionizing radiation
GO:0016303 ISS 1-phosphatidylinositol-3-kinase activity
GO:0016572 IEA histone phosphorylation
GO:0018105 IEA peptidyl-serine phosphorylation
GO:0030889 IEA negative regulation of B cell proliferation
GO:0031410 IEA cytoplasmic vesicle
GO:0032403 IEA protein complex binding
GO:0033151 IGI V(D)J recombination
GO:0035174 IEA histone serine kinase activity
GO:0035404 IEA histone-serine phosphorylation
GO:0036092 IEA phosphatidylinositol-3-phosphate biosynthetic process
GO:0042159 IGI lipoprotein catabolic process
GO:0043065 IEA positive regulation of apoptotic process
GO:0043517 IEA positive regulation of DNA damage response, signal transduction by p53 class mediator
GO:0043525 IGI positive regulation of neuron apoptotic process
GO:0046777 IEA protein autophosphorylation
GO:0046983 IEA protein dimerization activity
GO:0047485 ISS protein N-terminus binding
GO:0048599 IMP oocyte development
GO:0051402 IGI neuron apoptotic process
GO:0051726 IEA regulation of cell cycle
GO:0071044 ISS histone mRNA catabolic process
GO:0071480 IEA cellular response to gamma radiation
GO:0072434 IEA signal transduction involved in mitotic G2 DNA damage checkpoint
GO:0090399 IEA replicative senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278616 ATM-201 protein_coding Homo_sapiens 0 9226
ENST00000452508 ATM-003 protein_coding Homo_sapiens 0 9226
ENST00000524792 ATM-011 retained_intron Homo_sapiens 0 5310
ENST00000525537 ATM-020 retained_intron Homo_sapiens 0 335
ENST00000527389 ATM-021 retained_intron Homo_sapiens 0 335
ENST00000527805 ATM-001 protein_coding Homo_sapiens 0 4002
ENST00000527891 ATM-026 protein_coding Homo_sapiens 3e-31 139
ENST00000529588 ATM-014 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000530958 ATM-002 protein_coding Homo_sapiens 0 630
ENST00000531525 ATM-012 protein_coding Homo_sapiens 0 438
ENST00000532765 ATM-019 processed_transcript Homo_sapiens 0 518
ENST00000533690 ATM-015 retained_intron Homo_sapiens 0 2937
ENST00000533733 ATM-010 retained_intron Homo_sapiens 0 446

Loading