C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calpain 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120717 Capn11-001 ENSMUSG00000058626 10090 - 17:45630204-45659325 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000120717
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000120717 0.048±0.02 0.037±0.01 0.131±0.00 0.033±0.02 0.032±0.01 0.011±0.00 0.062±0.04 0.034±0.05 0.133±0.11 0.062±0.05 1.140±1.44 13.928±2.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001669 IDA acrosomal vesicle
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0006508 IBA proteolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000002949 CAPN1 (1 of 2)-202 protein_coding Danio_rerio 2e-29 135
ENSDART00000113658 CAPN1 (1 of 2)-201 protein_coding Danio_rerio 2e-29 135
ENSDART00000077071 CAPN1 (1 of 2)-203 protein_coding Danio_rerio 1e-26 126
ENSDART00000105101 capn2b-201 protein_coding Danio_rerio 0.000000000000001 90
ENSDART00000130493 capn2b-002 protein_coding Danio_rerio 0.000000000000001 90
ENSDART00000077958 capn2b-001 protein_coding Danio_rerio 0.000000000000001 90
ENST00000398776 CAPN11-001 protein_coding Homo_sapiens 0 1587
ENST00000524554 CAPN11-002 retained_intron Homo_sapiens 0 237
ENST00000533604 CAPN11-003 retained_intron Homo_sapiens 0 656

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