C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 213
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131035 Rnf213-001 ENSMUSG00000070327 10090 + 11:119393100-119487418 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverPlacentaTestisENSMUST00000131035
Transcript ID Bladder Brain Heart Kidney Liver Placenta Testis
ENSMUST00000131035 1.688±0.00 0.078±0.03 0.488±0.00 0.643±0.00 0.431±0.14 0.519±0.00 0.652±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046U CIL_00046U_0002 CGP 11:119355557-119487418
CIL_0002LC CIL_0002LC_0002 CGP 11:119393100-119511437

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005737 ISS cytoplasm
GO:0006200 ISS ATP catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 ISS protein ubiquitination
GO:0016874 IEA ligase activity
GO:0016887 ISS ATPase activity
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000508628 RNF213-001 protein_coding Homo_sapiens 0 3766
ENST00000559070 RNF213-003 retained_intron Homo_sapiens 0 318
ENST00000582970 RNF213-020 protein_coding Homo_sapiens 0 3766

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