C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 4 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133708 Hps4-002 ENSMUSG00000042328 10090 + 5:112343095-112378414 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000133708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000133708 3.700±1.04 6.120±1.51 2.153±0.50 5.480±0.37 4.470±0.85 6.108±1.95 0.709±0.30 2.419±0.64 1.243±0.42 2.925±0.39 0.477±0.17 3.704±1.80 1.275±0.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336873 HPS4-006 protein_coding Homo_sapiens 0 496
ENST00000398145 HPS4-005 protein_coding Homo_sapiens 0 496
ENST00000402105 HPS4-008 protein_coding Homo_sapiens 0 457
ENST00000422379 HPS4-022 protein_coding Homo_sapiens 0 453
ENST00000429411 HPS4-010 nonsense_mediated_decay Homo_sapiens 2e-35 156
ENST00000439453 HPS4-002 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000459918 HPS4-017 processed_transcript Homo_sapiens 4.06377e-44 182
ENST00000464362 HPS4-011 nonsense_mediated_decay Homo_sapiens 2e-35 156
ENST00000466781 HPS4-004 retained_intron Homo_sapiens 0 446
ENST00000485842 HPS4-016 retained_intron Homo_sapiens 0 270
ENST00000496385 HPS4-003 retained_intron Homo_sapiens 0 414

Loading