C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small integral membrane protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000142029 Smim12-001 ENSMUSG00000042380 10090 + 4:127243784-127247809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000142029
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000142029 16.706±1.29 35.412±1.66 14.574±0.82 13.631±5.75 15.899±5.26 18.522±0.93 14.609±3.43 23.401±5.23 12.216±3.02 22.590±2.35 21.605±2.62 20.930±3.80 24.489±8.90 10.753±3.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000497 CIL_000497_0002 CGP 4:127243784-127314039

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000417239 SMIM12-006 protein_coding Homo_sapiens 0 385
ENST00000423898 SMIM12-005 protein_coding Homo_sapiens 0 444
ENST00000426886 SMIM12-001 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000446026 SMIM12-003 protein_coding Homo_sapiens 0 494
ENST00000456842 SMIM12-004 protein_coding Homo_sapiens 0 499
ENST00000521580 SMIM12-002 protein_coding Homo_sapiens 0 538

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