C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 4933411G11Rik gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159781 4933411G11Rik-002 ENSMUSG00000029586 10090 + 5:143181484-143204416 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyPlacentaTestisENSMUST00000159781
Transcript ID Bladder Brain Kidney Placenta Testis
ENSMUST00000159781 0.015±0.00 0.021±0.00 0.059±0.00 0.005±0.00 5.363±2.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258704 SPDYE1-001 protein_coding Homo_sapiens 0 220
ENST00000341656 SPDYE2-001 protein_coding Homo_sapiens 0 220
ENST00000355920 SPDYE7P-001 processed_transcript Homo_sapiens 0 231
ENST00000420373 SPDYE7P-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 231
ENST00000432940 SPDYE2-201 protein_coding Homo_sapiens 0 220
ENST00000436228 SPDYE2B-201 protein_coding Homo_sapiens 0 220
ENST00000455020 SPDYE2B-002 protein_coding Homo_sapiens 0 220
ENST00000455862 SPDYE5-201 protein_coding Homo_sapiens 0 231
ENST00000507450 SPDYE2B-001 protein_coding Homo_sapiens 0 220
ENST00000507918 SPDYE2-002 protein_coding Homo_sapiens 0 220
ENST00000510091 AC007000.12-001 unprocessed_pseudogene Homo_sapiens 0 248
ENST00000515340 AC004980.11-001 unprocessed_pseudogene Homo_sapiens 0 241
ENST00000563237 SPDYE6-001 protein_coding Homo_sapiens 0 226
ENST00000582158 CTD-2510F5.2-001 unprocessed_pseudogene Homo_sapiens 0 263
ENST00000624640 SPDYE5-202 protein_coding Homo_sapiens 0 231
ENST00000625065 SPDYE5-001 protein_coding Homo_sapiens 0 231

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