C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 3555
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160287 Gm3555-001 ENSMUSG00000089791 10090 + 1:98457768-98459162 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160287 0.143±0.10 0.190±0.06 0.183±0.06 0.389±0.45 0.368±0.16 0.366±0.15 0.113±0.04 0.106±0.08 0.066±0.05 0.160±0.09 0.026±0.00 0.248±0.19 0.329±0.48 1.065±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WC CIL_0007WC_0002 VISTA 1:97887842-98493251

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000389032 STK38L-001 protein_coding Homo_sapiens 0 1724
ENST00000434385 STK38L-010 retained_intron Homo_sapiens 0 211
ENST00000536093 STK38L-003 nonsense_mediated_decay Homo_sapiens 0 719
ENST00000539863 STK38L-011 retained_intron Homo_sapiens 0 283
ENST00000540996 STK38L-007 protein_coding Homo_sapiens 0 409
ENST00000541191 STK38L-004 protein_coding Homo_sapiens 0 538
ENST00000543246 STK38L-005 protein_coding Homo_sapiens 0 538
ENST00000543992 STK38L-002 retained_intron Homo_sapiens 0 488
ENST00000544367 STK38L-009 nonsense_mediated_decay Homo_sapiens 0 283
ENST00000544969 STK38L-006 protein_coding Homo_sapiens 0 538
ENST00000545470 STK38L-012 protein_coding Homo_sapiens 0 283
ENST00000546286 STK38L-008 nonsense_mediated_decay Homo_sapiens 0 209

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