C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164099 Snx19-201 ENSMUSG00000031993 10090 + 9:30427329-30466726 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000164099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000164099 7.008±1.47 6.934±3.11 8.006±0.42 8.238±2.71 5.778±2.97 4.454±1.37 4.704±0.86 6.381±1.31 3.499±1.47 7.216±1.29 4.187±1.24 8.092±1.75 4.151±1.00 4.827±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CP CIL_0003CP_0002 CGP 9:30427329-30922452

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265909 SNX19-001 protein_coding Homo_sapiens 0 2669
ENST00000452841 SNX19P2-001 processed_pseudogene Homo_sapiens 0 2176
ENST00000524460 SNX19-013 processed_transcript Homo_sapiens 0 750
ENST00000528555 SNX19-002 protein_coding Homo_sapiens 0 1295
ENST00000530356 SNX19-006 protein_coding Homo_sapiens 0 1297
ENST00000531608 SNX19-010 retained_intron Homo_sapiens 2.00386e-43 180
ENST00000533214 SNX19-005 protein_coding Homo_sapiens 0 2150
ENST00000533318 SNX19-003 processed_transcript Homo_sapiens 0 494
ENST00000580193 SNX19P3-001 processed_pseudogene Homo_sapiens 0 2128
ENST00000619576 RP11-205A8.3-001 unprocessed_pseudogene Homo_sapiens 0 206

Loading