C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000164624 Rb1-002 ENSMUSG00000022105 10090 - 14:73280171-73325641 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078H CIL_00078H_0003 CGP 14:73183673-73325822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005819 IDA spindle
GO:0007050 IMP cell cycle arrest
GO:0008285 IGI negative regulation of cell proliferation
GO:0030182 IMP neuron differentiation
GO:0031175 IMP neuron projection development
GO:0034349 IMP glial cell apoptotic process
GO:0035914 IMP skeletal muscle cell differentiation
GO:0042551 IMP neuron maturation
GO:0043353 IGI enucleate erythrocyte differentiation
GO:0045651 IGI positive regulation of macrophage differentiation
GO:0045786 IMP negative regulation of cell cycle
GO:0045879 IMP negative regulation of smoothened signaling pathway
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045930 IGI negative regulation of mitotic cell cycle
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048565 IMP digestive tract development
GO:0048667 IMP cell morphogenesis involved in neuron differentiation
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0051146 IGI striated muscle cell differentiation
GO:0051301 IMP cell division
GO:0051402 IMP neuron apoptotic process
GO:0051726 IMP regulation of cell cycle
GO:0097284 IMP hepatocyte apoptotic process
GO:2000134 IMP negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267163 RB1-002 protein_coding Homo_sapiens 0 228
ENST00000467505 RB1-003 nonsense_mediated_decay Homo_sapiens 0 305

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