C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00078H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000006782-ENSDARG00000006782 CGP 7955 21:22075717-22132576
GeneTranscriptPositionBiotype
ENSDARG00000006782 (rb1)
retinoblastoma 1 		ENSDART00000024309 (rb1-001) 22075717-22132576 protein_coding
ENSDARG00000069441 (lpar6b)
lysophosphatidic acid receptor 6b 		ENSDART00000101082 (lpar6b-001) 22100060-22101091 protein_coding
ENSDART00000156491 (lpar6b-201) 22100051-22101025 protein_coding
CIL_00078H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139687-ENSG00000139687 CGP 9606 13:48303751-48481986
GeneTranscriptPositionBiotype
ENSG00000139679 (LPAR6)
lysophosphatidic acid receptor 6 		ENST00000345941 (LPAR6-001) 48411139-48426907 protein_coding
ENST00000378434 (LPAR6-003) 48411045-48444704 protein_coding
ENST00000462781 (LPAR6-006) 48389571-48415813 processed_transcript
ENST00000464486 (LPAR6-008) 48389571-48391531 processed_transcript
ENST00000465365 (LPAR6-004) 48389567-48444667 processed_transcript
ENST00000470937 (LPAR6-005) 48389571-48415816 processed_transcript
ENST00000481832 (LPAR6-007) 48389571-48406709 processed_transcript
ENST00000482024 (LPAR6-002) 48411741-48412489 processed_transcript
ENST00000620633 (LPAR6-201) 48411048-48415810 protein_coding
ENSG00000139687 (RB1)
retinoblastoma 1 		ENST00000267163 (RB1-002) 48303775-48481986 protein_coding
ENST00000467505 (RB1-003) 48303775-48362908 nonsense_mediated_decay
ENST00000480491 (RB1-004) 48444828-48456307 processed_transcript
ENST00000484879 (RB1-001) 48476447-48480647 processed_transcript
ENST00000525036 (RB1-006) 48303751-48360737 retained_intron
ENST00000531171 (RB1-005) 48476400-48480339 processed_transcript
ENSG00000177197 (PCNPP5)
PEST containing nuclear protein pseudogene 5 		ENST00000452246 (PCNPP5-001) 48328084-48328564 processed_pseudogene
ENSG00000238086 (PPP1R26P1)
protein phosphatase 1, regulatory subunit 26 pseudogene 1 		ENST00000474415 (PPP1R26P1-001) 48316863-48320475 processed_pseudogene
ENSG00000277233 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000614413 (Metazoa_SRP.1-418) 48429269-48429554 misc_RNA
ENSG00000277684 (RP11-305D15.8)
 ENST00000613946 (RP11-305D15.8-001) 48340797-48341330 antisense
CIL_00078H_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022105-ENSMUSG00000022105 CGP 10090 14:73183673-73325822
GeneTranscriptPositionBiotype
ENSMUSG00000022105 (Rb1)
retinoblastoma 1 		ENSMUST00000022701 (Rb1-001) 73195502-73325822 protein_coding
ENSMUST00000163932 (Rb1-004) 73183673-73287707 processed_transcript
ENSMUST00000164624 (Rb1-002) 73280171-73325641 nonsense_mediated_decay
ENSMUST00000168495 (Rb1-006) 73196974-73203266 retained_intron
ENSMUST00000169002 (Rb1-003) 73262400-73264321 retained_intron
ENSMUST00000170967 (Rb1-005) 73238546-73239786 processed_transcript
ENSMUSG00000022106 (Rcbtb2)
regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 		ENSMUST00000022702 (Rcbtb2-008) 73143162-73183693 protein_coding
ENSMUST00000110952 (Rcbtb2-201) 73143593-73182682 protein_coding
ENSMUST00000163339 (Rcbtb2-012) 73123037-73161986 protein_coding
ENSMUST00000163533 (Rcbtb2-019) 73142992-73164783 protein_coding
ENSMUST00000163546 (Rcbtb2-004) 73142707-73155211 retained_intron
ENSMUST00000163650 (Rcbtb2-013) 73138768-73155212 retained_intron
ENSMUST00000163797 (Rcbtb2-010) 73161940-73182602 nonsense_mediated_decay
ENSMUST00000164298 (Rcbtb2-011) 73161940-73182599 nonsense_mediated_decay
ENSMUST00000164822 (Rcbtb2-001) 73142537-73184218 protein_coding
ENSMUST00000165334 (Rcbtb2-016) 73143017-73154791 retained_intron
ENSMUST00000165429 (Rcbtb2-024) 73142558-73166507 protein_coding
ENSMUST00000165567 (Rcbtb2-022) 73143157-73164850 protein_coding
ENSMUST00000165646 (Rcbtb2-018) 73143110-73155165 retained_intron
ENSMUST00000165727 (Rcbtb2-020) 73143110-73166840 protein_coding
ENSMUST00000166875 (Rcbtb2-007) 73173884-73182518 protein_coding
ENSMUST00000167021 (Rcbtb2-023) 73143400-73161969 protein_coding
ENSMUST00000167401 (Rcbtb2-021) 73143076-73183162 protein_coding
ENSMUST00000169479 (Rcbtb2-202) 73151485-73184047 protein_coding
ENSMUST00000169513 (Rcbtb2-002) 73143099-73184218 protein_coding
ENSMUST00000170278 (Rcbtb2-005) 73174451-73182682 retained_intron
ENSMUST00000170368 (Rcbtb2-017) 73142723-73162388 protein_coding
ENSMUST00000170370 (Rcbtb2-015) 73142536-73164719 protein_coding
ENSMUST00000170677 (Rcbtb2-009) 73143062-73184047 protein_coding
ENSMUST00000171070 (Rcbtb2-014) 73138768-73162337 protein_coding
ENSMUST00000171163 (Rcbtb2-003) 73143009-73164084 retained_intron
ENSMUST00000171767 (Rcbtb2-006) 73142863-73207843 protein_coding
ENSMUSG00000033446 (Lpar6)
lysophosphatidic acid receptor 6 		ENSMUST00000044405 (Lpar6-001) 73237895-73243294 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078H_0001ENSDARG00000006782ENSDART00000024309ENSDARG00000069441ENSDART00000101082ENSDART00000156491CIL_00078H_0002ENSG00000139679ENST00000345941ENST00000378434ENST00000462781ENST00000464486ENST00000465365ENST00000470937ENST00000481832ENST00000482024ENST00000620633ENSG00000139687ENST00000267163ENST00000467505ENST00000480491ENST00000484879ENST00000525036ENST00000531171ENSG00000177197ENST00000452246ENSG00000238086ENST00000474415ENSG00000277233ENST00000614413ENSG00000277684ENST00000613946CIL_00078H_0003ENSMUSG00000022105ENSMUST00000022701ENSMUST00000163932ENSMUST00000164624ENSMUST00000168495ENSMUST00000169002ENSMUST00000170967ENSMUSG00000022106ENSMUST00000022702ENSMUST00000110952ENSMUST00000163339ENSMUST00000163533ENSMUST00000163546ENSMUST00000163650ENSMUST00000163797ENSMUST00000164298ENSMUST00000164822ENSMUST00000165334ENSMUST00000165429ENSMUST00000165567ENSMUST00000165646ENSMUST00000165727ENSMUST00000166875ENSMUST00000167021ENSMUST00000167401ENSMUST00000169479ENSMUST00000169513ENSMUST00000170278ENSMUST00000170368ENSMUST00000170370ENSMUST00000170677ENSMUST00000171070ENSMUST00000171163ENSMUST00000171767ENSMUSG00000033446ENSMUST00000044405
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078H_0001ENSDARG00000006782ENSDART00000024309ENSDARG00000069441ENSDART00000101082ENSDART00000156491CIL_00078H_0002ENSG00000139679ENST00000345941ENST00000378434ENST00000464486ENST00000465365ENST00000470937ENST00000482024ENST00000620633ENSG00000139687ENST00000267163ENST00000484879ENST00000531171ENSG00000177197ENST00000452246ENSG00000238086ENST00000474415ENSG00000277233ENST00000614413ENSG00000277684ENST00000613946CIL_00078H_0003ENSMUSG00000022105ENSMUST00000022701ENSMUSG00000022106ENSMUST00000022702ENSMUST00000110952ENSMUST00000164822ENSMUST00000167021ENSMUST00000169479ENSMUST00000171767ENSMUSG00000033446ENSMUST00000044405
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006782 ENSDART00000024309 N/A N/A N/A 2.213±0.16 N/A N/A 1.438±0.51 2.669±1.01 0.992±0.00 N/A 0.641±0.00 N/A N/A N/A
ENSDARG00000069441 ENSDART00000101082 N/A N/A N/A 0.109±0.03 N/A N/A 0.786±0.00 N/A N/A N/A 0.228±0.00 N/A N/A N/A
ENSDART00000156491 N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A 0.621±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000139679 ENST00000345941 N/A N/A N/A 0.750±0.03 N/A N/A N/A N/A N/A N/A N/A N/A 1.637±0.31 1.751±0.00
ENST00000378434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.156±0.00
ENST00000462781 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.363±0.00
ENST00000465365 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.524±0.00
ENST00000470937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.451±0.00 N/A N/A N/A
ENST00000481832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482024 N/A 6.495±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.742±0.00 12.846±0.00 13.514±0.00 5.497±0.00
ENST00000620633 9.962±0.00 8.119±0.00 N/A 1.749±0.96 11.177±1.39 3.542±0.30 3.562±0.26 5.410±0.07 4.042±1.92 13.038±2.92 0.939±0.11 5.071±2.53 7.085±2.08 1.330±0.00
ENSG00000139687 ENST00000267163 7.523±0.00 6.112±0.00 1.803±0.00 4.436±0.49 6.302±0.12 5.464±0.29 3.671±0.96 4.336±2.22 2.807±1.48 3.088±0.50 4.496±1.80 4.576±1.85 3.123±0.53 4.840±1.86
ENST00000467505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484879 N/A N/A N/A N/A 6.930±0.00 N/A N/A N/A N/A N/A N/A 3.120±0.00 6.974±0.00 1.956±0.00
ENST00000525036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.656±0.00 N/A 3.241±0.00
ENSG00000177197 ENST00000452246 0.084±0.00 0.392±0.00 N/A 0.090±0.00 0.086±0.00 0.028±0.00 0.080±0.00 0.030±0.00 0.536±0.51 0.114±0.00 0.026±0.00 0.073±0.00 N/A 0.058±0.02
ENSG00000238086 ENST00000474415 0.053±0.00 0.300±0.00 0.056±0.00 0.057±0.01 0.084±0.03 0.034±0.01 0.075±0.02 0.104±0.00 0.033±0.00 0.085±0.00 N/A 0.021±0.01 0.016±0.00 0.077±0.01
ENSG00000277233 ENST00000614413 N/A 0.213±0.00 2.169±0.00 1.259±0.69 0.076±0.00 N/A 0.067±0.00 1.996±0.00 N/A 2.125±0.00 N/A 2.481±0.00 N/A 0.671±0.00
ENSG00000277684 ENST00000613946 N/A 0.179±0.00 N/A 0.014±0.00 0.534±0.41 0.026±0.00 0.076±0.02 0.213±0.00 0.099±0.00 N/A N/A 0.065±0.02 0.135±0.00 0.037±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022105 ENSMUST00000022701 7.386±1.16 N/A 3.419±0.36 10.927±5.90 5.932±1.78 4.636±0.91 2.888±0.34 4.067±1.58 12.427±4.39 5.993±0.25 3.144±0.31 6.862±2.90 7.371±7.73 4.386±1.39
ENSMUST00000163932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164624 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022106 ENSMUST00000022702 12.789±1.36 7.916±2.41 7.369±0.10 11.415±6.55 9.848±2.49 3.213±0.77 2.867±0.37 4.310±0.78 4.305±0.75 6.463±0.90 1.762±0.14 13.183±4.17 4.633±0.37 N/A
ENSMUST00000110952 19.193±1.04 8.093±2.95 9.936±0.87 6.645±2.69 17.993±3.18 7.921±1.50 4.564±0.28 9.275±1.29 9.349±1.74 10.255±1.19 4.800±0.67 16.624±4.89 11.455±3.80 18.831±6.63
ENSMUST00000163339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163546 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164822 N/A 6.199±1.98 N/A N/A 7.619±0.00 N/A N/A N/A N/A N/A N/A 7.050±0.73 N/A N/A
ENSMUST00000165334 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166875 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167021 N/A 8.684±3.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169479 N/A 4.678±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.894±2.29 N/A N/A
ENSMUST00000169513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171767 N/A 3.166±0.59 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033446 ENSMUST00000044405 9.331±0.83 2.704±0.43 5.013±0.81 1.188±0.69 10.579±1.02 3.700±0.60 1.705±0.16 2.853±0.55 3.685±1.04 3.024±0.27 0.430±0.09 4.015±1.81 1.998±1.08 0.208±0.10

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