C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic elongation factor, selenocysteine-tRNA-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165242 Eefsec-201 ENSMUSG00000033216 10090 - 6:88257334-88446539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165242 7.268±1.31 9.873±0.61 6.367±0.83 6.331±0.88 8.217±2.85 8.091±2.33 1.954±0.61 13.509±2.42 13.060±6.28 4.869±1.27 1.486±0.14 15.741±6.79 8.446±4.51 20.306±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005JN CIL_0005JN_0002 CGP 6:88257334-88497572

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0001514 IDA selenocysteine incorporation
GO:0003746 IDA translation elongation factor activity
GO:0003924 IDA GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IDA GTP binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0030529 IDA ribonucleoprotein complex
GO:0035368 IDA selenocysteine insertion sequence binding
GO:0043021 IDA ribonucleoprotein complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254730 EEFSEC-001 protein_coding Homo_sapiens 0 1676
ENST00000464873 RUVBL1-002 protein_coding Homo_sapiens 0 226
ENST00000483457 EEFSEC-002 protein_coding Homo_sapiens 0 614
ENST00000484438 EEFSEC-004 processed_transcript Homo_sapiens 0 370

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