C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G patch domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166021 Gpatch4-202 ENSMUSG00000028069 10090 + 3:88043108-88055993 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENSMUST00000166021
Transcript ID Muscle
ENSMUST00000166021 1.768±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002244 IGI hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368232 GPATCH4-001 protein_coding Homo_sapiens 0 667
ENST00000415314 GPATCH4-009 protein_coding Homo_sapiens 0 281
ENST00000438976 GPATCH4-015 protein_coding Homo_sapiens 0 641
ENST00000463513 GPATCH4-004 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000473910 GPATCH4-002 retained_intron Homo_sapiens 9.00054e-42 176
ENST00000474904 GPATCH4-003 nonsense_mediated_decay Homo_sapiens 3e-27 126
ENST00000494414 GPATCH4-007 retained_intron Homo_sapiens 0 224
ENST00000497287 GPATCH4-006 processed_transcript Homo_sapiens 0 224
ENST00000498641 GPATCH4-008 retained_intron Homo_sapiens 5e-28 128
ENST00000529520 GPATCH4-016 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000531129 GPATCH4-013 processed_transcript Homo_sapiens 0 313

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