C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fibrinogen alpha chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166581 Fga-202 ENSMUSG00000028001 10090 + 3:83026153-83033615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000166581
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000166581 0.055±0.05 0.060±0.02 0.086±0.00 0.017±0.00 0.661±0.04 0.073±0.03 0.198±0.02 1.268±0.33 149.927±106.36 0.116±0.07 0.040±0.02 0.275±0.26 40.441±50.46 0.050±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D1 CIL_0008D1_0002 VISTA 3:82670874-83271669

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005938 IDA cell cortex
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0007596 IMP blood coagulation
GO:0009897 IEA external side of plasma membrane
GO:0009986 IEA cell surface
GO:0030674 IEA protein binding, bridging
GO:0031091 IEA platelet alpha granule
GO:0031982 IEA vesicle
GO:0034116 IEA positive regulation of heterotypic cell-cell adhesion
GO:0043623 IEA cellular protein complex assembly
GO:0045907 IEA positive regulation of vasoconstriction
GO:0045921 IEA positive regulation of exocytosis
GO:0050714 IEA positive regulation of protein secretion
GO:0050839 IEA cell adhesion molecule binding
GO:0051592 IEA response to calcium ion
GO:0070062 IEA extracellular vesicular exosome
GO:0070374 IEA positive regulation of ERK1 and ERK2 cascade
GO:0070527 IEA platelet aggregation
GO:0072377 IEA blood coagulation, common pathway
GO:0072562 IEA blood microparticle
GO:0090277 IEA positive regulation of peptide hormone secretion
GO:1902042 IEA negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000352 IEA negative regulation of endothelial cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302053 FGA-002 protein_coding Homo_sapiens 0 928
ENST00000403106 FGA-001 protein_coding Homo_sapiens 1.99965e-42 178

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