C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: isocitrate dehydrogenase 3 (NAD+) alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167866 Idh3a-201 ENSMUSG00000032279 10090 + 9:54586511-54604661 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167866
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167866 79.752±27.52 51.261±8.37 21.618±2.27 33.378±25.23 67.910±23.69 44.739±2.46 196.859±9.65 63.540±6.75 17.723±6.64 22.688±3.33 165.602±6.00 25.167±2.66 27.540±14.85 6.718±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YR CIL_0007YR_0002 VISTA 9:54035032-54637557
CIL_0001UM CIL_0001UM_0002 CGP 9:54544794-54604661
CIL_0003NR CIL_0003NR_0003 CGP 9:54586511-54661870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004449 IEA isocitrate dehydrogenase (NAD+) activity
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006099 IEA tricarboxylic acid cycle
GO:0051287 IEA NAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299518 IDH3A-001 protein_coding Homo_sapiens 0 1633
ENST00000557826 IDH3A-016 protein_coding Homo_sapiens 0 387
ENST00000558509 IDH3A-009 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000558535 IDH3A-002 processed_transcript Homo_sapiens 0 1384
ENST00000558554 IDH3A-006 protein_coding Homo_sapiens 0 1099
ENST00000558602 IDH3A-003 retained_intron Homo_sapiens 0 891
ENST00000558933 IDH3A-008 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000559106 IDH3A-011 nonsense_mediated_decay Homo_sapiens 0 292
ENST00000559186 IDH3A-012 protein_coding Homo_sapiens 0 505
ENST00000559803 IDH3A-021 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000559881 IDH3A-014 protein_coding Homo_sapiens 0 688
ENST00000559889 IDH3A-004 retained_intron Homo_sapiens 0 1408
ENST00000560396 IDH3A-023 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000560667 IDH3A-005 nonsense_mediated_decay Homo_sapiens 0 1511
ENST00000560770 IDH3A-015 protein_coding Homo_sapiens 0 224
ENST00000561279 IDH3A-022 protein_coding Homo_sapiens 0 542

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