C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: deafness, autosomal dominant 5 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170142 Dfna5-201 ENSMUSG00000029821 10090 - 6:50207403-50261769 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000170142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000170142 3.682±2.15 0.319±0.14 1.818±0.17 6.821±3.02 1.004±0.46 4.380±1.28 0.134±0.04 2.363±0.18 0.996±0.67 0.273±0.07 0.641±0.24 1.825±1.32 0.522±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CT CIL_0002CT_0002 CGP 6:50110241-50263862
CIL_0002CS CIL_0002CS_0002 CGP 6:50189369-50456201

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006915 IEA apoptotic process
GO:0007605 ISA sensory perception of sound
GO:0060113 IMP inner ear receptor cell differentiation
GO:2001244 ISS positive regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342947 DFNA5-001 protein_coding Homo_sapiens 0 896
ENST00000409775 DFNA5-003 protein_coding Homo_sapiens 0 896
ENST00000409970 DFNA5-005 protein_coding Homo_sapiens 0 684
ENST00000411476 DFNA5-008 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000414428 DFNA5-007 protein_coding Homo_sapiens 0 231
ENST00000419307 DFNA5-201 protein_coding Homo_sapiens 0 684
ENST00000473990 DFNA5-002 retained_intron Homo_sapiens 0 346
ENST00000493723 DFNA5-004 retained_intron Homo_sapiens 0 582

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