C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177567 Slc38a3-203 ENSMUSG00000010064 10090 - 9:107651161-107668968 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000177567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000177567 2.185±1.01 0.351±0.12 0.155±0.01 5.078±0.77 3.596±1.47 0.764±0.62 18.178±7.97 15.458±4.29 597.999±579.14 1.105±0.71 5.297±0.00 12.323±6.38 2.646±2.12 0.037±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00010B CIL_00010B_0003 CGP 9:107614138-107668968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005290 IDA L-histidine transmembrane transporter activity
GO:0005887 IDA integral component of plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006868 IDA glutamine transport
GO:0015186 IDA L-glutamine transmembrane transporter activity
GO:0015293 IEA symporter activity
GO:0015297 IEA antiporter activity
GO:0015817 IDA histidine transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000417121 SLC38A3-003 retained_intron Homo_sapiens 0 283
ENST00000417851 SLC38A3-004 retained_intron Homo_sapiens 0 403
ENST00000445096 SLC38A3-007 protein_coding Homo_sapiens 0 961
ENST00000610458 SLC38A3-008 protein_coding Homo_sapiens 0 279
ENST00000614032 SLC38A3-001 protein_coding Homo_sapiens 0 1980
ENST00000620404 SLC38A3-002 retained_intron Homo_sapiens 0 300
ENST00000621456 SLC38A3-009 protein_coding Homo_sapiens 0 296
ENST00000621714 SLC38A3-006 nonsense_mediated_decay Homo_sapiens 0 616

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