C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GRAM domain containing 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179565 Gramd1c-201 ENSMUSG00000036292 10090 - 16:43980350-44013039 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179565 0.143±0.02 0.059±0.00 1.163±0.65 0.437±0.05 0.286±0.14 0.526±0.07 0.214±0.05 0.075±0.00 1.664±1.24 0.320±0.00 0.079±0.03 0.718±0.33 0.506±0.28 3.793±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CC CIL_0003CC_0002 CGP 16:43969078-44027945
CIL_000555 CIL_000555_0002 CGP 16:43980350-44139705

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358160 GRAMD1C-001 protein_coding Homo_sapiens 0 1328
ENST00000440446 GRAMD1C-006 protein_coding Homo_sapiens 0 1328
ENST00000462838 GRAMD1C-007 protein_coding Homo_sapiens 0 1013
ENST00000463760 GRAMD1C-015 processed_transcript Homo_sapiens 1e-26 122
ENST00000466898 GRAMD1C-008 retained_intron Homo_sapiens 0 289
ENST00000472026 GRAMD1C-005 protein_coding Homo_sapiens 0 1325
ENST00000472384 GRAMD1C-003 nonsense_mediated_decay Homo_sapiens 7e-30 135
ENST00000479212 GRAMD1C-004 processed_transcript Homo_sapiens 0 909
ENST00000484714 GRAMD1C-016 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000491038 GRAMD1C-013 retained_intron Homo_sapiens 0 388

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