C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, gamma subunit 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182222 Cacng8-001 ENSMUSG00000053395 10090 + 7:3390683-3415648 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverOvaryTestisENSMUST00000182222
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Ovary Testis
ENSMUST00000182222 0.034±0.00 0.290±0.00 0.016±0.00 5.836±2.36 0.031±0.00 0.050±0.00 0.012±0.01 0.207±0.06 0.438±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PD CIL_0005PD_0002 CGP 7:3332955-3415648
CIL_0001VE CIL_0001VE_0002 CGP 7:3390683-3435667

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005244 IEA voltage-gated ion channel activity
GO:0005262 IEA calcium channel activity
GO:0016021 IEA integral component of membrane
GO:0070588 IEA calcium ion transmembrane transport
GO:2000311 IEA regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000103894 cacng8b-001 protein_coding Danio_rerio 0 255
ENSDART00000155602 cacng8b-201 protein_coding Danio_rerio 0 220
ENST00000270458 CACNG8-001 protein_coding Homo_sapiens 0 1690

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