C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA dehydrogenase, C-2 to C-3 short chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000242592 ACADS-001 ENSG00000122971 9606 + 12:120725735-120740008 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000242592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000242592 26.293±0.00 12.449±0.00 0.756±0.00 3.502±2.05 24.867±23.19 8.837±4.99 17.282±15.81 15.584±8.78 43.736±43.58 4.261±3.49 24.034±18.64 6.697±3.96 18.597±5.46 21.880±3.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000062 IEA fatty-acyl-CoA binding
GO:0003995 TAS:IEA acyl-CoA dehydrogenase activity
GO:0004085 IEA butyryl-CoA dehydrogenase activity
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006635 TAS fatty acid beta-oxidation
GO:0008152 IEA metabolic process
GO:0016627 IEA oxidoreductase activity, acting on the CH-CH group of donors
GO:0031966 IEA mitochondrial membrane
GO:0033539 IEA fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 IEA response to starvation
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0046359 IEA butyrate catabolic process
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0051289 IEA protein homotetramerization
GO:0051384 IEA response to glucocorticoid
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031524 Acads-001 protein_coding Mus_musculus 0 1400
ENSMUST00000131726 Acads-002 retained_intron Mus_musculus 0 782
ENSDART00000014669 acads-001 protein_coding Danio_rerio 0 435
ENSMUST00000150291 Acads-005 protein_coding Mus_musculus 0 420
ENSDART00000137686 acads-003 protein_coding Danio_rerio 6e-23 113

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