C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258243 URB2-001 ENSG00000135763 9606 + 1:229626234-229660199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258243 0.798±0.00 1.585±0.00 0.346±0.00 0.915±0.01 0.943±0.21 0.800±0.00 0.636±0.44 1.350±0.37 0.822±0.08 0.712±0.07 2.318±1.53 2.058±0.91 1.526±0.30 3.240±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005S6 CIL_0005S6_0001 CGP 1:229593111-229660199
CIL_000611 CIL_000611_0001 CGP 1:229626234-230282124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0016235 IDA aggresome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034457 Urb2-001 protein_coding Mus_musculus 0 2861
ENSMUST00000173168 Urb2-002 nonsense_mediated_decay Mus_musculus 0 2832

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