C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisomal biogenesis factor 13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000295030 PEX13-001 ENSG00000162928 9606 + 2:61017722-61051990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295030 4.658±0.00 3.491±0.00 1.781±0.00 2.960±0.50 4.057±0.10 4.126±0.20 3.555±1.67 4.990±0.86 5.823±0.45 3.635±0.32 4.660±3.17 6.527±3.37 3.465±1.35 8.622±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ZC CIL_0000ZC_0002 CGP 2:61017225-61138034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001561 ISS fatty acid alpha-oxidation
GO:0001764 ISS neuron migration
GO:0001967 ISS suckling behavior
GO:0005515 IPI:IEA protein binding
GO:0005777 IDA:IEA peroxisome
GO:0005778 IDA peroxisomal membrane
GO:0005779 IDA integral component of peroxisomal membrane
GO:0007626 ISS locomotory behavior
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016560 TAS:IEA protein import into peroxisome matrix, docking
GO:0021795 ISS cerebral cortex cell migration
GO:0060152 ISS microtubule-based peroxisome localization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020523 Pex13-001 protein_coding Mus_musculus 0 1755
ENSMUST00000118184 Pex13-ps-001 processed_pseudogene Mus_musculus 0 1140
ENSMUST00000124839 Pex13-003 processed_transcript Mus_musculus 0 412
ENSMUST00000130811 Pex13-004 nonsense_mediated_decay Mus_musculus 0 327
ENSMUST00000038014 Dnajc16-001 protein_coding Mus_musculus 0.0000000008 71
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000004 66

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