C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: megalencephalic leukoencephalopathy with subcortical cysts 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000311597 MLC1-001 ENSG00000100427 9606 - 22:50059391-50085902 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungOvaryPlacentaTestisENST00000311597
Transcript ID Brain Colon Lung Ovary Placenta Testis
ENST00000311597 4.552±2.08 0.015±0.00 0.622±0.00 0.357±0.21 0.525±0.15 0.719±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YW CIL_0005YW_0001 CGP 22:50015123-50085902
CIL_000093 CIL_000093_0001 CGP 22:50059391-50161690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 NAS transporter activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005764 ISS lysosome
GO:0005768 IDA endosome
GO:0005769 ISS early endosome
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0005901 ISS caveola
GO:0005911 IEA cell-cell junction
GO:0006810 NAS transport
GO:0006811 IEA ion transport
GO:0008565 ISS protein transporter activity
GO:0015031 IEA protein transport
GO:0016021 IDA integral component of membrane
GO:0016192 ISS vesicle-mediated transport
GO:0016323 IDA basolateral plasma membrane
GO:0016324 IEA apical plasma membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0032388 IDA positive regulation of intracellular transport
GO:0032403 IDA protein complex binding
GO:0045121 ISS membrane raft
GO:0047484 IMP regulation of response to osmotic stress
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051259 IDA protein oligomerization
GO:0055037 ISS recycling endosome
GO:0071397 ISS cellular response to cholesterol
GO:0072584 ISS caveolin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109368 Mlc1-002 protein_coding Mus_musculus 0 1002
ENSMUST00000042594 Mlc1-001 protein_coding Mus_musculus 0 1002

Loading