C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, non-erythrocytic 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000320955 SPTBN5-001 ENSG00000137877 9606 - 15:41848144-41894077 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryTestisENST00000320955
Transcript ID Bladder Ovary Testis
ENST00000320955 0.193±0.00 1.517±1.16 0.974±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005F8 CIL_0005F8_0001 CGP 15:41828085-41848155
CIL_0005F2 CIL_0005F2_0001 CGP 15:41828095-41848155
CIL_0005IR CIL_0005IR_0002 CGP 15:41848144-41972578

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 NAS actin binding
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0007030 IMP Golgi organization
GO:0007041 IMP lysosomal transport
GO:0007411 TAS axon guidance
GO:0008091 NAS spectrin
GO:0016020 NAS membrane
GO:0019894 IDA kinesin binding
GO:0030036 NAS actin cytoskeleton organization
GO:0030507 IDA spectrin binding
GO:0032029 IDA myosin tail binding
GO:0032391 IDA photoreceptor connecting cilium
GO:0034452 IDA dynactin binding
GO:0043234 IEA protein complex
GO:0043621 IDA protein self-association
GO:0045505 IDA dynein intermediate chain binding
GO:0051260 IDA protein homooligomerization
GO:0051693 IEA actin filament capping
GO:0070062 IDA extracellular vesicular exosome
GO:0097381 IDA photoreceptor disc membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000134935 Sptbn5-003 protein_coding Mus_musculus 0 1932
ENSMUST00000156159 Sptbn5-001 protein_coding Mus_musculus 0 1498

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