C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase I and transcript release factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357037 PTRF-001 ENSG00000177469 9606 - 17:42402452-42423517 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357037 462.893±0.00 215.837±0.00 8.388±0.00 12.934±10.78 334.195±301.73 166.238±147.64 47.015±28.53 31.933±28.11 58.608±46.92 152.032±126.96 69.127±56.45 138.795±125.70 230.506±15.53 111.810±92.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00046I CIL_00046I_0001 CGP 17:42313324-42423517
CIL_00046F CIL_00046F_0001 CGP 17:42402452-42522611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IDA plasma membrane
GO:0005901 IDA caveola
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 IDA transcription initiation from RNA polymerase I promoter
GO:0006363 IDA termination of RNA polymerase I transcription
GO:0010467 TAS gene expression
GO:0042134 IDA rRNA primary transcript binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060792 Ptrf-001 protein_coding Mus_musculus 0 1877
ENSMUST00000132934 Ptrf-002 processed_transcript Mus_musculus 0 638

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