C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 1 homolog (S. cerevisiae)-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367506 TRMT1L-001 ENSG00000121486 9606 - 1:185118098-185156981 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000367506
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000367506 2.206±0.00 1.194±0.00 1.177±0.00 1.792±1.09 2.675±1.08 1.749±0.63 2.559±1.31 2.971±1.45 1.884±0.23 0.829±0.22 3.747±2.84 2.987±1.04 2.183±0.26 10.966±0.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0003723 IEA RNA binding
GO:0004809 IEA tRNA (guanine-N2-)-methyltransferase activity
GO:0008033 IEA tRNA processing
GO:0008344 IEA adult locomotory behavior
GO:0030488 IEA tRNA methylation
GO:0030534 IEA adult behavior
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065625 Trmt1l-001 protein_coding Mus_musculus 0 2599
ENSMUST00000188843 Trmt1l-006 retained_intron Mus_musculus 0 1565
ENSMUST00000189655 Trmt1l-007 nonsense_mediated_decay Mus_musculus 0 1489
ENSMUST00000188179 Trmt1l-002 retained_intron Mus_musculus 0 1112
ENSMUST00000185230 Trmt1l-004 retained_intron Mus_musculus 0 617
ENSMUST00000188679 Trmt1l-003 retained_intron Mus_musculus 0 542
ENSMUST00000186244 Trmt1l-005 retained_intron Mus_musculus 0 388

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