C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prolyl-tRNA synthetase 2, mitochondrial (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000371279 PARS2-001 ENSG00000162396 9606 - 1:54756898-54764514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371279
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371279 0.557±0.00 0.610±0.00 0.291±0.00 0.788±0.17 0.965±0.23 1.182±0.11 0.803±0.52 1.486±1.22 0.919±0.33 0.440±0.14 1.310±0.40 2.365±0.64 2.281±0.53 3.509±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085J CIL_00085J_0001 VISTA 1:54159373-54763153
CIL_00005C CIL_00005C_0002 CGP 1:54715822-54764514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004827 IEA proline-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006433 IEA prolyl-tRNA aminoacylation
GO:0010467 TAS gene expression

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106781 Pars2-003 protein_coding Mus_musculus 0 1356
ENSMUST00000058905 Pars2-001 protein_coding Mus_musculus 0 1354
ENSMUST00000106782 Pars2-002 protein_coding Mus_musculus 0 366

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