C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: agouti signaling protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374954 ASIP-001 ENSG00000101440 9606 + 20:34260365-34269344 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENST00000374954
Transcript ID Adipose Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENST00000374954 0.198±0.00 0.253±0.00 0.101±0.00 1.771±0.00 0.651±0.00 0.096±0.00 2.902±0.00 0.608±0.00 1.043±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS:IEA receptor binding
GO:0005576 IEA extracellular region
GO:0005615 TAS extracellular space
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0009755 IEA hormone-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029123 a-001 protein_coding Mus_musculus 0 374
ENSMUST00000109697 a-004 protein_coding Mus_musculus 0 374
ENSMUST00000148300 a-006 retained_intron Mus_musculus 0 235

Loading