C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAH (Asp-Glu-Ala-His) box polypeptide 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376442 DHX16-001 ENSG00000204560 9606 - 6:30653119-30673037 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376442 7.308±0.00 9.030±0.00 1.505±0.00 4.943±0.75 3.949±2.64 4.324±2.13 6.308±0.00 6.647±2.71 3.548±0.78 2.719±1.24 12.061±10.52 9.961±5.46 11.384±1.19 24.816±2.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003724 TAS RNA helicase activity
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006200 IEA ATP catabolic process
GO:0006397 IEA mRNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0008380 IEA RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025292 Dhx16-001 protein_coding Mus_musculus 0 3746
ENSMUST00000174366 Dhx16-002 nonsense_mediated_decay Mus_musculus 0 3598
ENSMUST00000172730 Dhx16-003 retained_intron Mus_musculus 0 872
ENSMUST00000173596 Dhx16-007 retained_intron Mus_musculus 0 556
ENSMUST00000174308 Dhx16-006 retained_intron Mus_musculus 0 392
ENSMUST00000174330 Dhx16-005 retained_intron Mus_musculus 0 326
ENSMUST00000173967 Dhx16-008 protein_coding Mus_musculus 0 309
ENSMUST00000174449 Dhx16-004 retained_intron Mus_musculus 0 261

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