C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378585 GABRD-001 ENSG00000187730 9606 + 1:2019324-2030751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378585
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378585 0.569±0.00 0.401±0.00 22.128±13.36 0.241±0.00 0.250±0.00 0.084±0.00 0.165±0.00 0.017±0.00 0.382±0.00 0.046±0.00 0.737±0.61 0.856±0.57 3.874±1.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0001 VISTA 1:1910870-2513425
CIL_0001ZM CIL_0001ZM_0002 CGP 1:1921951-2030751

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0007165 TAS signal transduction
GO:0007268 IEA synaptic transmission
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030925 Gabrd-001 protein_coding Mus_musculus 0 1408
ENSMUST00000150423 Gabrd-002 processed_transcript Mus_musculus 0 743
ENSDART00000083416 gabrd-201 protein_coding Danio_rerio 0 732
ENSDART00000132000 gabrd-001 protein_coding Danio_rerio 0 656

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