C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small muscle protein, X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379494 SMPX-001 ENSG00000091482 9606 - X:21705972-21758163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379494
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379494 1.168±0.16 2.696±2.00 5.528±4.23 79.351±47.58 0.051±0.00 1.481±0.00 0.133±0.00 65.371±3.10 0.742±0.31 0.722±0.42 3.090±2.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002L0 CIL_0002L0_0002 CGP X:21654690-21758163
CIL_0002L6 CIL_0002L6_0002 CGP X:21705972-21885424

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005927 IEA muscle tendon junction
GO:0006941 TAS striated muscle contraction
GO:0031430 IEA M band
GO:0043034 IEA costamere
GO:0043292 IEA contractile fiber

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112521 Smpx-005 protein_coding Mus_musculus 0 599
ENSMUST00000190091 Smpx-201 protein_coding Mus_musculus 0 403
ENSMUST00000038007 Smpx-001 nonsense_mediated_decay Mus_musculus 0 403
ENSMUST00000112520 Smpx-003 protein_coding Mus_musculus 0 270
ENSMUST00000132805 Smpx-006 retained_intron Mus_musculus 0 215
ENSMUST00000147283 Smpx-004 nonsense_mediated_decay Mus_musculus 0 213

Loading