C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-rel avian reticuloendotheliosis viral oncogene homolog
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394479 REL-002 ENSG00000162924 9606 + 2:60881656-60922984 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394479
Transcript ID Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394479 1.600±0.00 3.627±0.00 1.141±0.74 1.206±0.00 4.025±0.00 3.084±0.00 1.525±0.00 3.434±1.57 0.879±0.00 1.604±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PG CIL_0008PG_0001 VISTA 2:60327921-60929753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 NAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043123 IEP positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102864 Rel-001 protein_coding Mus_musculus 0 1570

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