C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401064 RP4-635E8.1-001 ENSG00000215893 9606 + 1:41098638-41099136 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartOvaryTestisENST00000401064
Transcript ID Adrenal Bladder Breast Colon Heart Ovary Testis
ENST00000401064 0.285±0.00 0.116±0.00 0.281±0.00 0.034±0.00 0.052±0.00 0.063±0.02 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C0 CIL_0009C0_0001 VISTA 1:40944924-41547265
CIL_000876 CIL_000876_0001 VISTA 1:40945428-41547337

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185244 RP23-349I9.15-001 processed_pseudogene Mus_musculus 1e-33 147
ENSMUST00000187903 RP23-349I9.24-001 processed_pseudogene Mus_musculus 6e-32 141
ENSMUST00000185511 Rpl23a-ps10-001 processed_pseudogene Mus_musculus 3e-30 135
ENSMUST00000187732 RP23-349I9.17-001 processed_pseudogene Mus_musculus 3e-30 135
ENSMUST00000187984 RP23-349I9.11-001 processed_pseudogene Mus_musculus 1e-28 130
ENSMUST00000185437 Rpl23a-ps7-001 processed_pseudogene Mus_musculus 3e-25 119

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