C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ER lipid raft associated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407654 ERLIN1-002 ENSG00000107566 9606 - 10:100151808-100186033 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000407654
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000407654 12.847±0.00 4.927±0.00 1.192±0.00 2.186±0.00 6.039±1.88 6.298±1.34 5.721±0.00 2.417±0.00 2.274±0.00 13.342±6.25 10.148±3.22 17.235±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DZ CIL_0005DZ_0001 CGP 10:100150094-100229619

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030433 IDA ER-associated ubiquitin-dependent protein catabolic process
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112028 Erlin1-001 protein_coding Mus_musculus 0 1810
ENSMUST00000071698 Erlin1-201 protein_coding Mus_musculus 0 1724
ENSMUST00000170801 Erlin1-002 protein_coding Mus_musculus 0 1724
ENSMUST00000172041 Erlin1-004 protein_coding Mus_musculus 0 726
ENSMUST00000170577 Erlin1-003 retained_intron Mus_musculus 0 289
ENSMUST00000171952 Erlin1-007 nonsense_mediated_decay Mus_musculus 0 287
ENSMUST00000168602 Erlin1-005 retained_intron Mus_musculus 0 287
ENSMUST00000172262 Erlin1-008 protein_coding Mus_musculus 3e-34 150
ENSMUST00000169092 Erlin1-006 protein_coding Mus_musculus 2e-22 111

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