C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414731 BRD2-001 ENSG00000234704 9606 + CHR_HSCHR6_MHC_MANN_CTG1:33122451-33135290 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IPI:IEA protein binding
GO:0006334 IMP nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007283 TAS spermatogenesis
GO:0016568 IEA chromatin modification
GO:0070577 IDA lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025193 Brd2-001 protein_coding Mus_musculus 0 3849
ENSMUST00000114242 Brd2-002 protein_coding Mus_musculus 0 3849
ENSMUST00000095347 Brd2-005 protein_coding Mus_musculus 0 3077
ENSMUST00000154232 Brd2-003 nonsense_mediated_decay Mus_musculus 0 2673
ENSMUST00000151986 Brd2-004 protein_coding Mus_musculus 0 2625
ENSMUST00000173204 Brd2-009 nonsense_mediated_decay Mus_musculus 0 568
ENSMUST00000142570 Brd2-008 retained_intron Mus_musculus 0 483
ENSMUST00000148143 Brd2-007 retained_intron Mus_musculus 0 409
ENSMUST00000173032 Brd2-010 protein_coding Mus_musculus 0 405
ENSMUST00000179687 Brd2-011 processed_transcript Mus_musculus 1e-37 163

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