C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HLA complex group 4 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418496 HCG4P3-001 ENSG00000231385 9606 - CHR_HSCHR6_MHC_SSTO_CTG1:29995393-29996388 unprocessed_pseudogene

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174589 H2-Q10-002 retained_intron Mus_musculus 0 265
ENSMUST00000068291 H2-Q10-201 protein_coding Mus_musculus 0 233
ENSMUST00000174525 H2-Q10-001 protein_coding Mus_musculus 0 233
ENSMUST00000174250 H2-K2-001 unprocessed_pseudogene Mus_musculus 0 213
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 213
ENSMUST00000173975 H2-Q4-002 retained_intron Mus_musculus 0 211
ENSMUST00000097335 Gm8909-201 protein_coding Mus_musculus 0 209
ENSMUST00000040467 Gm8909-001 protein_coding Mus_musculus 0 209
ENSMUST00000173353 Gm8909-002 protein_coding Mus_musculus 0 209
ENSMUST00000081435 H2-Q4-001 protein_coding Mus_musculus 0 193
ENSMUST00000172979 H2-Q5-001 polymorphic_pseudogene Mus_musculus 0 191
ENSMUST00000174854 H2-Q5-002 retained_intron Mus_musculus 0 191
ENSMUST00000076256 H2-Q7-201 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000078205 H2-Q7-202 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000116598 H2-Q7-203 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000173788 H2-Q7-003 retained_intron Mus_musculus 5.60519e-45 185
ENSMUST00000071951 H2-Q7-001 protein_coding Mus_musculus 5.60519e-45 185
ENSMUST00000113879 H2-Q6-201 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000174699 H2-Q6-001 protein_coding Mus_musculus 9.99967e-42 174
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 6e-40 169
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 6e-40 169
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 6e-35 152
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 6e-35 152
ENSMUST00000038580 H2-M3-001 protein_coding Mus_musculus 0.00000003 64

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