C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HLA complex group 4 (non-protein coding)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418983 HCG4-001 ENSG00000176998 9606 - 6:29791753-29792750 unprocessed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000418983
Transcript ID Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000418983 0.201±0.00 0.487±0.00 0.095±0.06 0.393±0.24 1.363±1.00 0.436±0.00 0.675±0.12 1.404±0.16 0.832±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000420 CIL_000420_0003 CGP 6:29722775-29831125

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074806 H2-Q2-001 protein_coding Mus_musculus 0 193
ENSMUST00000172785 H2-D1-001 protein_coding Mus_musculus 1.4013e-45 187
ENSMUST00000172994 H2-Q1-003 retained_intron Mus_musculus 2.99878e-43 180
ENSMUST00000073208 H2-Q1-001 protein_coding Mus_musculus 2e-40 171
ENSMUST00000105041 H2-Q1-002 protein_coding Mus_musculus 2e-40 171
ENSMUST00000174589 H2-Q10-002 retained_intron Mus_musculus 6e-20 102

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