C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteoglycan 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445192 PRG4-001 ENSG00000116690 9606 + 1:186296279-186314562 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BO CIL_0001BO_0003 CGP 1:186296279-186375693

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005044 IEA scavenger receptor activity
GO:0005615 IEA extracellular space
GO:0006898 IEA receptor-mediated endocytosis
GO:0006955 IEA immune response
GO:0008283 TAS cell proliferation
GO:0030247 IEA polysaccharide binding
GO:0042127 IEA regulation of cell proliferation
GO:0045409 IEA negative regulation of interleukin-6 biosynthetic process
GO:0071425 IEA hematopoietic stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164600 Prg4-204 protein_coding Mus_musculus 0 1779
ENSMUST00000161611 Prg4-002 protein_coding Mus_musculus 0 1779
ENSMUST00000111902 Prg4-203 protein_coding Mus_musculus 0 1343
ENSMUST00000111901 Prg4-202 protein_coding Mus_musculus 0 1168
ENSMUST00000006171 Prg4-201 protein_coding Mus_musculus 0 1048
ENSMUST00000162367 Prg4-001 protein_coding Mus_musculus 0 952
ENSDART00000152232 nt5c2b-003 retained_intron Danio_rerio 0.0001 53
ENSDART00000152493 nt5c2b-002 retained_intron Danio_rerio 0.0001 53
ENSDART00000065125 nt5c2b-001 protein_coding Danio_rerio 0.0001 53
ENSDART00000126286 nt5c2b-201 protein_coding Danio_rerio 0.0003 53

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