C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN and SH3 domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455600 RUSC2-201 ENSG00000198853 9606 + 9:35538632-35561898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000455600
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000455600 0.682±0.00 4.974±1.75 0.451±0.00 0.511±0.00 0.786±0.03 0.191±0.00 2.231±0.00 0.836±0.00 3.254±0.00 1.565±1.18 1.940±0.29 4.126±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XM CIL_0004XM_0001 CGP 9:35490127-35563899

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0008150 ND biological_process
GO:0017137 IPI Rab GTPase binding
GO:0031410 IDA cytoplasmic vesicle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098106 Rusc2-003 protein_coding Mus_musculus 0 5105
ENSMUST00000035645 Rusc2-001 protein_coding Mus_musculus 0 5103
ENSMUST00000131668 Rusc2-004 protein_coding Mus_musculus 0 4606
ENSMUST00000173682 Rusc2-016 nonsense_mediated_decay Mus_musculus 0 2748
ENSMUST00000131037 Rusc2-018 processed_transcript Mus_musculus 0 1701
ENSMUST00000125393 Rusc2-002 retained_intron Mus_musculus 0 961
ENSMUST00000154754 Rusc2-015 retained_intron Mus_musculus 0 761
ENSMUST00000149556 Rusc2-011 processed_transcript Mus_musculus 0 664
ENSMUST00000139198 Rusc2-012 protein_coding Mus_musculus 0 597
ENSMUST00000146710 Rusc2-017 processed_transcript Mus_musculus 0 436
ENSMUST00000150066 Rusc2-008 processed_transcript Mus_musculus 0 348
ENSMUST00000136360 Rusc2-009 protein_coding Mus_musculus 0 324
ENSMUST00000135216 Rusc2-006 protein_coding Mus_musculus 0 270
ENSMUST00000149221 Rusc2-014 protein_coding Mus_musculus 0 248
ENSMUST00000123447 Rusc2-013 retained_intron Mus_musculus 0 239

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