C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 398
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475153 ZNF398-003 ENSG00000197024 9606 + 7:149147476-149180465 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverOvaryENST00000475153
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Ovary
ENST00000475153 0.425±0.00 1.036±0.00 0.710±0.00 0.925±0.00 0.530±0.00 1.545±0.00 1.008±0.00 1.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XN CIL_0004XN_0001 CGP 7:149126416-149226248

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 NAS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0045893 NAS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079881 Zfp398-001 protein_coding Mus_musculus 0 2237
ENSMUST00000114598 Zfp398-002 protein_coding Mus_musculus 0 1672
ENSMUST00000146202 Zfp398-003 retained_intron Mus_musculus 0 569
ENSMUST00000156500 Zfp212-002 retained_intron Mus_musculus 0 209
ENSMUST00000009411 Zfp212-001 protein_coding Mus_musculus 0 209
ENSMUST00000073124 Zfp746-201 protein_coding Mus_musculus 0 207
ENSMUST00000140719 Zfp956-002 nonsense_mediated_decay Mus_musculus 1e-30 139
ENSMUST00000174790 Zfp956-003 retained_intron Mus_musculus 1e-30 139
ENSMUST00000101445 Zfp956-001 protein_coding Mus_musculus 1e-30 139

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